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bgpt-paper-search

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.

0 downloads 0 views Updated Oct 31, 2026 v1.0.0
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Overview

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.

Source: https://github.com/DenDen047/claude-scientific-skills · MIT · © 2025 K-Dense Inc.

System prompt

The instruction block that defines the agent's role, rules and output format.

system-prompt.txt
# BGPT Paper Search

## Overview

BGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text studies. Unlike traditional literature databases that return titles and abstracts, BGPT returns structured data from the actual paper content — methods, quantitative results, sample sizes, quality assessments, and 25+ metadata fields per paper.

## When to Use This Skill

Use this skill when:
- Searching for scientific papers with specific experimental details
- Conducting systematic or scoping literature reviews
- Finding quantitative results, sample sizes, or effect sizes across studies
- Comparing methodologies used in different studies
- Looking for papers with quality scores or evidence grading
- Needing structured data from full-text papers (not just abstracts)
- Building evidence tables for meta-analyses or clinical guidelines

## Setup

BGPT is a remote MCP server — no local installation required.

### Claude Desktop / Claude Code

Add to your MCP configuration:

```json
{
  "mcpServers": {
    "bgpt": {
      "command": "npx",
      "args": ["mcp-remote", "https://bgpt.pro/mcp/sse"]
    }
  }
}
```

### npm (alternative)

```bash
npx bgpt-mcp
```

## Usage

Once configured, use the `search_papers` tool provided by the BGPT MCP server:

```
Search for papers about: "CRISPR gene editing efficiency in human cells"
```

The server returns structured results including:
- **Title, authors, journal, year, DOI**
- **Methods**: Experimental techniques, models, protocols
- **Results**: Key findings with quantitative data
- **Sample sizes**: Number of subjects/samples
- **Quality scores**: Study quality assessments
- **Conclusions**: Author conclusions and implications

## Pricing

- **Free tier**: 50 searches per network, no API key required
- **Paid**: $0.01 per result with an API key from [bgpt.pro/mcp](https://bgpt.pro/mcp)

User prompt template

Fill in the variables and send it to run the skill: {{variables}}

user-template.txt

Variables

Name Required Description Example

Full skill configuration

The standard .aiskill file in JSON and YAML.

bgpt-paper-search.aiskill (JSON)
{
  "format": "aiskill/v1",
  "skill": {
    "name": "bgpt-paper-search",
    "slug": "bgpt-paper-search",
    "version": "1.0.0",
    "description": "Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.",
    "category": "Research",
    "tags": [
      "research-science",
      "mcp",
      "research"
    ],
    "platforms": [
      "chatgpt",
      "claude-code",
      "cursor"
    ],
    "tested_environment": "Agent Skills convention (SKILL.md) — works with Claude Code, Cursor, ChatGPT/Codex and compatible agents",
    "license": "MIT"
  },
  "prompts": {
    "system": "# BGPT Paper Search\r\n\r\n## Overview\r\n\r\nBGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text studies. Unlike traditional literature databases that return titles and abstracts, BGPT returns structured data from the actual paper content — methods, quantitative results, sample sizes, quality assessments, and 25+ metadata fields per paper.\r\n\r\n## When to Use This Skill\r\n\r\nUse this skill when:\r\n- Searching for scientific papers with specific experimental details\r\n- Conducting systematic or scoping literature reviews\r\n- Finding quantitative results, sample sizes, or effect sizes across studies\r\n- Comparing methodologies used in different studies\r\n- Looking for papers with quality scores or evidence grading\r\n- Needing structured data from full-text papers (not just abstracts)\r\n- Building evidence tables for meta-analyses or clinical guidelines\r\n\r\n## Setup\r\n\r\nBGPT is a remote MCP server — no local installation required.\r\n\r\n### Claude Desktop / Claude Code\r\n\r\nAdd to your MCP configuration:\r\n\r\n```json\r\n{\r\n  \"mcpServers\": {\r\n    \"bgpt\": {\r\n      \"command\": \"npx\",\r\n      \"args\": [\"mcp-remote\", \"https://bgpt.pro/mcp/sse\"]\r\n    }\r\n  }\r\n}\r\n```\r\n\r\n### npm (alternative)\r\n\r\n```bash\r\nnpx bgpt-mcp\r\n```\r\n\r\n## Usage\r\n\r\nOnce configured, use the `search_papers` tool provided by the BGPT MCP server:\r\n\r\n```\r\nSearch for papers about: \"CRISPR gene editing efficiency in human cells\"\r\n```\r\n\r\nThe server returns structured results including:\r\n- **Title, authors, journal, year, DOI**\r\n- **Methods**: Experimental techniques, models, protocols\r\n- **Results**: Key findings with quantitative data\r\n- **Sample sizes**: Number of subjects/samples\r\n- **Quality scores**: Study quality assessments\r\n- **Conclusions**: Author conclusions and implications\r\n\r\n## Pricing\r\n\r\n- **Free tier**: 50 searches per network, no API key required\r\n- **Paid**: $0.01 per result with an API key from [bgpt.pro/mcp](https://bgpt.pro/mcp)",
    "user_template": ""
  },
  "variables": [],
  "install": {
    "steps": [
      {
        "title": "Download & unzip",
        "detail": "Download the .zip package from SkillVault and unzip it. The bgpt-paper-search/ folder contains SKILL.md plus any companion scripts, references and assets."
      },
      {
        "title": "Copy into your agent skills directory",
        "detail": "Move the folder into your agent's skills directory — e.g. ~/.claude/skills/ (Claude Code), .codex/skills/, .cursor/skills/ or your project's .claude/skills/ folder — then restart or reload the session."
      },
      {
        "title": "Use it",
        "detail": "Describe the task in natural language; the agent loads the skill automatically when the request matches the skill description."
      }
    ]
  },
  "usage": {
    "steps": []
  },
  "metadata": {
    "author": "SkillVault",
    "source": "https://skillvault.top/skills/bgpt-paper-search",
    "exported_at": "2026-11-03T07:44:37.526Z"
  }
}
bgpt-paper-search.aiskill (YAML)
format: aiskill/v1
skill:
  name: bgpt-paper-search
  slug: bgpt-paper-search
  version: 1.0.0
  description: >-
    Search scientific papers and retrieve structured experimental data extracted from full-text
    studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample
    sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and
    finding experimental details not available in abstracts alone.
  category: Research
  tags:
    - research-science
    - mcp
    - research
  platforms:
    - chatgpt
    - claude-code
    - cursor
  tested_environment: >-
    Agent Skills convention (SKILL.md) — works with Claude Code, Cursor, ChatGPT/Codex and
    compatible agents
  license: MIT
prompts:
  system: "# BGPT Paper Search\r\n\r\n## Overview\r\n\r\nBGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text studies. Unlike traditional literature databases that return titles and abstracts, BGPT returns structured data from the actual paper content — methods, quantitative results, sample sizes, quality assessments, and 25+ metadata fields per paper.\r\n\r\n## When to Use This Skill\r\n\r\nUse this skill when:\r\n- Searching for scientific papers with specific experimental details\r\n- Conducting systematic or scoping literature reviews\r\n- Finding quantitative results, sample sizes, or effect sizes across studies\r\n- Comparing methodologies used in different studies\r\n- Looking for papers with quality scores or evidence grading\r\n- Needing structured data from full-text papers (not just abstracts)\r\n- Building evidence tables for meta-analyses or clinical guidelines\r\n\r\n## Setup\r\n\r\nBGPT is a remote MCP server — no local installation required.\r\n\r\n### Claude Desktop / Claude Code\r\n\r\nAdd to your MCP configuration:\r\n\r\n```json\r\n{\r\n  \"mcpServers\": {\r\n    \"bgpt\": {\r\n      \"command\": \"npx\",\r\n      \"args\": [\"mcp-remote\", \"https://bgpt.pro/mcp/sse\"]\r\n    }\r\n  }\r\n}\r\n```\r\n\r\n### npm (alternative)\r\n\r\n```bash\r\nnpx bgpt-mcp\r\n```\r\n\r\n## Usage\r\n\r\nOnce configured, use the `search_papers` tool provided by the BGPT MCP server:\r\n\r\n```\r\nSearch for papers about: \"CRISPR gene editing efficiency in human cells\"\r\n```\r\n\r\nThe server returns structured results including:\r\n- **Title, authors, journal, year, DOI**\r\n- **Methods**: Experimental techniques, models, protocols\r\n- **Results**: Key findings with quantitative data\r\n- **Sample sizes**: Number of subjects/samples\r\n- **Quality scores**: Study quality assessments\r\n- **Conclusions**: Author conclusions and implications\r\n\r\n## Pricing\r\n\r\n- **Free tier**: 50 searches per network, no API key required\r\n- **Paid**: $0.01 per result with an API key from [bgpt.pro/mcp](https://bgpt.pro/mcp)"
  user_template: ""
variables: []
install:
  steps:
    - title: Download & unzip
      detail: >-
        Download the .zip package from SkillVault and unzip it. The bgpt-paper-search/ folder
        contains SKILL.md plus any companion scripts, references and assets.
    - title: Copy into your agent skills directory
      detail: >-
        Move the folder into your agent's skills directory — e.g. ~/.claude/skills/ (Claude Code),
        .codex/skills/, .cursor/skills/ or your project's .claude/skills/ folder — then restart or
        reload the session.
    - title: Use it
      detail: >-
        Describe the task in natural language; the agent loads the skill automatically when the
        request matches the skill description.
usage:
  steps: []
metadata:
  author: SkillVault
  source: https://skillvault.top/skills/bgpt-paper-search
  exported_at: "2026-11-03T07:44:37.526Z"

Installation guide

  1. 1

    Download & unzip

    Download the .zip package from SkillVault and unzip it. The bgpt-paper-search/ folder contains SKILL.md plus any companion scripts, references and assets.

  2. 2

    Copy into your agent skills directory

    Move the folder into your agent's skills directory — e.g. ~/.claude/skills/ (Claude Code), .codex/skills/, .cursor/skills/ or your project's .claude/skills/ folder — then restart or reload the session.

  3. 3

    Use it

    Describe the task in natural language; the agent loads the skill automatically when the request matches the skill description.

How to use

Platform compatibility

ChatGPT GPTs

OpenAI

Paste the system prompt into the GPT "Instructions" field and keep the user template as your starter message.

Official docs

Claude Code

Anthropic

Save the exported .aiskill JSON as a skill file in your project or paste the system prompt into CLAUDE.md / a slash-command markdown file.

Official docs

Cursor

Anysphere

Copy the system prompt into .cursor/rules/*.mdc (or Project Rules in Settings) and reference the user template in your agent prompts.

Official docs

Related skills